Skip to content
Snippets Groups Projects
Commit d63a342a authored by Ángel's avatar Ángel
Browse files

Update file results.html

parent b8ca4e38
No related branches found
No related tags found
No related merge requests found
Pipeline #481252 passed
...@@ -104,7 +104,7 @@ ...@@ -104,7 +104,7 @@
<img src="https://static.igem.wiki/teams/5054/structures.svg" alt="Fig 1: Graphical overview of the experiment plan." style="background: white;"> <img src="https://static.igem.wiki/teams/5054/structures.svg" alt="Fig 1: Graphical overview of the experiment plan." style="background: white;">
<figcaption>Figure 5: Structural predictions. (a) Consensus structure of all uTP sequences extracted from UCYN-A imported proteins. (b) Consensus structure of all uTP sequences with charged residues shown (red=negative, blue=positive). (c) Consensus structure aligned onto uTP1 + mNeonGreen construct (RMSD=4.00Å). (d) Consensus structure aligned onto uTP2 + mNeonGreen construct (RMSD=3.77Å). </figcaption> <figcaption>Figure 5: Structural predictions. (a) Consensus structure of all uTP sequences extracted from UCYN-A imported proteins. (b) Consensus structure of all uTP sequences with charged residues shown (red=negative, blue=positive). (c) Consensus structure aligned onto uTP1 + mNeonGreen construct (RMSD=4.00Å). (d) Consensus structure aligned onto uTP2 + mNeonGreen construct (RMSD=3.77Å). </figcaption>
</div> </div>
<p>In the case of mitochondrial and chloroplast imported proteins, there is a well-known overlap: numerous proteins have twin transit peptides or ambiguous targeting sequences targeting both organelles. To investigate whether there is a similar overlap between the potential UCYN-A import system and other known cellular transport systems, we used established protein localization prediction tools on the potential list of UCYN-A imported proteins. These predictions proved to be inconclusive. A large minority (28%) of them were classified as secreted (Fig 4). This suggests that the UCYN-A import system, similar to other protein transport mechanisms, might be related to the Sec system. <p>In the case of mitochondrial and chloroplast imported proteins, there is a well-known overlap: numerous proteins have twin transit peptides or ambiguous targeting sequences targeting both organelles. To investigate whether there is a similar overlap between the potential UCYN-A import system and other known cellular transport systems, we used established protein localization prediction tools on the potential list of UCYN-A imported proteins. These predictions proved to be inconclusive. A large minority (28%) of them were classified as secreted (Fig 6). This suggests that the UCYN-A import system, similar to other protein transport mechanisms, might be related to the Sec system.
</p> </p>
<p>We also investigated both sequence and structural homologs of uTP in public databases (NCBI, PDB, AlphaFold/Proteome) and found no significant matches.</p> <p>We also investigated both sequence and structural homologs of uTP in public databases (NCBI, PDB, AlphaFold/Proteome) and found no significant matches.</p>
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment