Update software.html

wiki/pages/software.html

@@ -266,18 +266,17 @@ block page_content %}
       <div class="toc">
         <!-- <h2>Table of Contents</h2> -->
         <ul>
-          <li><a href="#section1">Introduction</a></li>
           <li><a href="#section2">Inspiration</a></li>
           <li><a href="#section3">Pipeline</a></li>
-          <li><a href="#section4">Web Tool &ndash; UI</a></li>
+          <li><a href="#section4">Web Tool</a></li>
         </ul>
       </div>
 
       <!-- Content Sections (on the right) -->
       <div class="content">
         <div id="section1" class="section">
-          <h1>Introduction</h1>
-
+          <p><br></p>
+          <p><br></p>
           <p style="text-align: justify">
             Chassis selection is a critical early decision in any synthetic
             biology project, particularly when working in environments beyond
@@ -360,7 +359,7 @@ block page_content %}
         <div id="section3" class="section">
           <h1>Pipeline</h1>
 
-          <h2 style="text-align: justify; padding-left: 40%">
+          <h2 style="text-align: justify; padding-left: 40%;font-family: glacial_indifference;">
             <strong>Overview</strong>
           </h2>
           <p style="text-align: justify">
@@ -600,7 +599,7 @@ block page_content %}
             KEGG serves as the backbone for retrieving organismal data while
             BRENDA supplements enzyme data for deeper insights into metabolic
             pathways. KEGG and BRENDA are queried to retrieve enzymes and genes
-            that act on the compound. &nbsp;Then, KEGG is queried to collect
+            that act on the compound. Then, KEGG is queried to collect
             enzyme and gene information to identify organisms.
           </p>
 
@@ -715,8 +714,7 @@ block page_content %}
           </p>
           <p style="text-align: justify">
             $$ \text{Resourcefulness score} = \frac{\sum_{database}^{n=4}
-            \text{no. of pathways/reactions/enzymes}}{\text{maximum no. of
-            pathways}}$$
+            \text{no. of pathways/reactions/enzymes}}{\text{maximum no. of pathways}}$$
           </p>
           <p><br /></p>
           <p style="text-align: justify">
@@ -735,17 +733,14 @@ block page_content %}
             databases.
           </p>
           <p style="text-align: justify">
-            $$ \text{Temperature score} =\frac{\text{length(input temperature
-            range} \cap \text{organism temperature range)}}{\text{length(input
-            temperature range)}}$$
+            $$ \text{Temperature score} =\frac{\text{length(input temperature range} \cap \text{organism temperature range)}}{\text{length(input temperature range)}}$$
           </p>
           <p style="text-align: justify">
             $$ \text{pH score} = \frac{\text{length(input pH range} \cap
             \text{organism pH range)}}{\text{length(input pH range)}}$$
           </p>
           <p style="text-align: justify">
-            $$ \text{Survivability score} = \text{Temperature score} + \text{pH
-            score}$$
+            $$ \text{Survivability score} = \text{Temperature score} + \text{pH score}$$
           </p>
           <p><br /></p>
           <p style="text-align: justify">
@@ -758,8 +753,8 @@ block page_content %}
             &lsquo;1&rsquo;.&nbsp;
           </p>
           <p style="text-align: justify">
-            $$ \text{Final score} = \text{w1}*\text{Resourcefulness score} +
-            \text{w2}*\text{Survivability score}$$ $$ \text{where w1, w2} = 1 $$
+            $$ \text{Final score} = \text{w1} \cdot \text{Resourcefulness score} +
+            \text{w2} \cdot \text{Survivability score}$$ $$ \text{where w1, w2} = 1 $$
           </p>
           <p style="text-align: justify">
             This can further be customized and fine-tuned as per the end
@@ -796,7 +791,7 @@ block page_content %}
           </p>
         </div>
         <div id="section4" class="section">
-          <h1>Web Tool &ndash; UI</h1>
+          <h1>Web Tool</h1>
           <p style="text-align: justify">
             We have created a web tool that provides a simple and accessible way
             for users to run our software without needing to download or