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Commit 65b2c271 authored by Liliana Sanfilippo's avatar Liliana Sanfilippo
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code/cit.py
+ 16
− 23
View file @ 65b2c271
......@@ -2,7 +2,7 @@
#- Python 3.x
#- bibtexparser (Installieren Sie es mit `pip install bibtexparser`)
# use like: python3 cit.py -i bibtex.bib -s 1
import re
problemlist = []
def main():
......@@ -109,7 +109,7 @@ def articleHTML(dictio, x, out):
authors = dictio['author']
authors = authors.replace(" and ", "|")
liste = authors.split("|")
for a in liste:
for i, a in enumerate(liste):
try:
first = None
last = None
......@@ -122,7 +122,6 @@ def articleHTML(dictio, x, out):
last = s[0]
name = last + ", " + first_sh + "."
else:
# Falls es nur einen Nachnamen gibt
last = s[0]
name = last + ", "
else:
......@@ -136,44 +135,37 @@ def articleHTML(dictio, x, out):
leng = len(s)
last = s[leng-1]
first = ''
for n in s[:-1]: # Alle bis auf den letzten Namen
for n in s[:-1]:
first += n[0] + '.'
name = last + ", " + first
if a == liste[-1]:
if i == len(liste) - 1:
out.write("\t" + "\t" + "<span property=\"schema:Name\"> " + name + "</span>" + "\n")
else:
out.write("\t" + "\t" + "<span property=\"schema:Name\"> " + name + "</span>;" + "\n")
out.write("\t" + "\t" + "<span property=\"schema:Name\"> " + name + "</span>;"+ "\n")
except Exception as e:
print(f"An unexpected error occurred: {e} see " + a)
out.write("\t" +"</span>"+ "\n")
out.write("\t" + "<span property=\"schema:name\">&nbsp;"+dictio['title']+ ". </span>"+ "\n")
out.write("\t" + "<span property=\"schema:name\">&nbsp;"+dictio['title']+ "</span>. "+ "\n")
out.write("\t" +"<i property=\"schema:publisher\" typeof=\"schema:Organization\"> "+ dictio['journal'] +"</i>"+ "\n")
out.write("\t" +"<b property=\"issueNumber\" typeof=\"PublicationIssue\"> "+dictio['volume']+"</b>,&nbsp;"+ "\n")
print("Getting pages...")
try:
pages = dictio['pages']
if pages is not None:
if len(pages) > 0:
if '--' in pages:
pag = pages.split("--")
begin = pag[0].strip()
end = pag[1].strip()
out.write("\t" + "<span property=\"schema:pageBegin\"> "+ begin +"</span>-<span property=\"schema:pageEnd\">"+ end + "</span>"+ "\n")
elif '-' in pages:
pag = pages.split("-")
if pages is not None and len(pages) > 0:
# Check if pages contain digits, which is a typical page format
if re.match(r'^\d+(-\d+)?$', pages):
if '--' in pages or '-' in pages:
pag = re.split('--|-', pages)
begin = pag[0].strip()
end = pag[1].strip()
out.write("\t" + "<span property=\"schema:pageBegin\"> "+ begin +"</span>-<span property=\"schema:pageEnd\">"+ end + "</span>"+ "\n")
elif len(pages) > 0:
out.write("\t" + "<span property=\"schema:pageBegin\">"+ pages +"</span>"+ "\n")
else:
print("Sorry, no readable page information")
problemlist.append("Check for missing page info at " + str (x))
else:
print("Sorry, no page information")
problemlist.append("Check for missing page info at " + str (x))
out.write("\t" + "<span property=\"schema:pageBegin\">"+ pages +"</span>"+ "\n")
else:
# Pages is not a number, treat as is (e.g., RP91288)
out.write("\t" + "<span property=\"schema:pageBegin\">"+ pages +"</span>"+ "\n")
else:
print("Sorry, no page information")
problemlist.append("Check for missing page info at " + str (x))
......@@ -181,6 +173,7 @@ def articleHTML(dictio, x, out):
print("Sorry, no page information")
problemlist.append("Check for missing page info at " + str (x))
year = dictio['year']
out.write("\t" +"(<time property=\"schema:datePublished\" datatype=\"xsd:gYear\" dateTime=\" " + year + "\">"+year+"</time>)."+ "\n")
......
code/output.txt
+ 67
− 67
View file @ 65b2c271
......@@ -4,9 +4,9 @@
<span property="schema:Name">
Cloarec-Ung, F.</span>;
<span property="schema:Name"> Beaulieu, J.</span>;
<span property="schema:Name"> Suthananthan, A.</span>;
<span property="schema:Name"> Suthananthan, A.a.L.</span>;
<span property="schema:Name"> Sauvageau, G.</span>;
<span property="schema:Name"> Sheppard, H.</span>;
<span property="schema:Name"> Sheppard, H.M.</span>;
<span property="schema:Name"> Knapp,
David J. H. F.
, </span>
......@@ -14,7 +14,7 @@ David J. H. F.
<span property="schema:name">&nbsp;
Near-perfect precise on-target editing of human hematopoietic stem and
progenitor cells
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> eLife</i>
<b property="issueNumber" typeof="PublicationIssue"> 12</b>,&nbsp;
<span property="schema:pageBegin">RP91288</span>
......@@ -26,19 +26,19 @@ progenitor cells
<li typeof="schema:ScolarlyArticle" role="doc-biblioentry" property="schema:citation" id="desc-2">
<span property="schema:author" typeof="schema:Person">
<span property="schema:Name">
Nelson, J.</span>;
<span property="schema:Name"> Randolph, P.</span>;
<span property="schema:Name"> Shen, S.</span>;
Nelson, J.W.</span>;
<span property="schema:Name"> Randolph, P.B.</span>;
<span property="schema:Name"> Shen, S.P.</span>;
<span property="schema:Name"> Everette,
Kelcee A., </span>;
<span property="schema:Name"> Chen, P.</span>;
<span property="schema:Name"> Anzalone, A.</span>;
<span property="schema:Name"> An, M.</span>;
<span property="schema:Name"> Chen, J.</span>;
<span property="schema:Name"> Chen, P.J.</span>;
<span property="schema:Name"> Anzalone, A.V.</span>;
<span property="schema:Name"> An, M.a.N.</span>;
<span property="schema:Name"> Chen, J.C.</span>;
<span property="schema:Name"> Hsu, A.</span>;
<span property="schema:Name"> Liu, D.</span>
<span property="schema:Name"> Liu, D.R.</span>
</span>
<span property="schema:name">&nbsp;Engineered pegRNAs improve prime editing efficiency. </span>
<span property="schema:name">&nbsp;Engineered pegRNAs improve prime editing efficiency</span>.
<i property="schema:publisher" typeof="schema:Organization"> Nature Biotechnology</i>
<b property="issueNumber" typeof="PublicationIssue"> 40</b>,&nbsp;
<span property="schema:pageBegin">402–410</span>
......@@ -50,23 +50,23 @@ Kelcee A., </span>;
<li typeof="schema:ScolarlyArticle" role="doc-biblioentry" property="schema:citation" id="desc-3">
<span property="schema:author" typeof="schema:Person">
<span property="schema:Name">
Doench, J.</span>;
Doench, J.G.</span>;
<span property="schema:Name"> Fusi, N.</span>;
<span property="schema:Name"> Sullender, M.</span>;
<span property="schema:Name"> Hegde, M.</span>;
<span property="schema:Name"> Donovan, K.</span>;
<span property="schema:Name"> Hegde, M.a.V.</span>;
<span property="schema:Name"> Donovan, K.F.</span>;
<span property="schema:Name"> Smith, I.</span>;
<span property="schema:Name"> Tothova,
Zuzana, </span>;
<span property="schema:Name"> Wilen, C.</span>;
<span property="schema:Name"> Orchard, R.</span>;
<span property="schema:Name"> Virgin, H.</span>;
<span property="schema:Name"> Root, D.</span>
<span property="schema:Name"> Virgin, H.W.a.L.</span>;
<span property="schema:Name"> Root, D.E.</span>
</span>
<span property="schema:name">&nbsp;
Optimized sgRNA design to maximize activity and minimize off-target effects
of CRISPR-Cas9
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Nature Biotechnology</i>
<b property="issueNumber" typeof="PublicationIssue"> 34</b>,&nbsp;
<span property="schema:pageBegin">184–191</span>
......@@ -81,12 +81,12 @@ of CRISPR-Cas9
White, N.</span>;
<span property="schema:Name"> Sadeeshkumar, H.</span>;
<span property="schema:Name"> Sun, A.</span>;
<span property="schema:Name"> Sudarsan, N.</span>
<span property="schema:Name"> Sudarsan, N.a.B.</span>
</span>
<span property="schema:name">&nbsp;
Na+ riboswitches regulate genes for diverse physiological processes in
bacteria
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Nature Chemical Biology</i>
<b property="issueNumber" typeof="PublicationIssue"> 18</b>,&nbsp;
<span property="schema:pageBegin">878–885</span>
......@@ -103,7 +103,7 @@ bacteria
<span property="schema:name">&nbsp;
Analysis of the XBP1 splicing mechanism using endoplasmic reticulum
stress-indicators
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Biochemical and Biophysical Research Communications</i>
<b property="issueNumber" typeof="PublicationIssue"> 350</b>,&nbsp;
<span property="schema:pageBegin">709–715</span>
......@@ -119,14 +119,14 @@ Zhang, Y.</span>;
<span property="schema:Name"> Lin, S.</span>;
<span property="schema:Name"> Yao, J.</span>;
<span property="schema:Name"> Cai, W.</span>;
<span property="schema:Name"> Chen, H.</span>;
<span property="schema:Name"> Chen, H.a.A.</span>;
<span property="schema:Name"> Wang, Z.</span>;
<span property="schema:Name"> Song, W.</span>
</span>
<span property="schema:name">&nbsp;
XBP1 splicing contributes to endoplasmic reticulum stress-induced human islet
amyloid polypeptide up-regulation
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Genes & Diseases</i>
<b property="issueNumber" typeof="PublicationIssue"> 11</b>,&nbsp;
<span property="schema:pageBegin">101148</span>
......@@ -144,20 +144,20 @@ Wei, T.</span>;
<span property="schema:Name"> Chatterjee, S.</span>;
<span property="schema:Name"> Traylor,
Zachary, </span>;
<span property="schema:Name"> Johnson, L.</span>;
<span property="schema:Name"> Coquelin, M.</span>;
<span property="schema:Name"> Wang, J.</span>;
<span property="schema:Name"> Johnson, L.T.</span>;
<span property="schema:Name"> Coquelin, M.L.</span>;
<span property="schema:Name"> Wang, J.a.T.</span>;
<span property="schema:Name"> Lian, X.</span>;
<span property="schema:Name"> Wang, X.</span>;
<span property="schema:Name"> Xiao, Y.</span>;
<span property="schema:Name"> Hodges,
Craig A., </span>;
<span property="schema:Name"> Siegwart, D.</span>
<span property="schema:Name"> Siegwart, D.J.</span>
</span>
<span property="schema:name">&nbsp;
Lung {SORT} {LNPs} enable precise homology-directed repair mediated
{CRISPR}/{Cas} genome correction in cystic fibrosis models
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Nature Communications</i>
<b property="issueNumber" typeof="PublicationIssue"> 14</b>,&nbsp;
<span property="schema:pageBegin">7322</span>
......@@ -182,10 +182,10 @@ Lung {SORT} {LNPs} enable precise homology-directed repair mediated
<span property="schema:name">&nbsp;
Polyethylene glycol (PEG): The nature, immunogenicity, and role in the
hypersensitivity of PEGylated products
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Journal of Controlled Release</i>
<b property="issueNumber" typeof="PublicationIssue"> 351</b>,&nbsp;
<span property="schema:pageBegin"> 215</span>-<span property="schema:pageEnd">230</span>
<span property="schema:pageBegin">215--230</span>
(<time property="schema:datePublished" datatype="xsd:gYear" dateTime=" 2022">2022</time>).
<a className="doi" href="https://doi.org/https://doi.org/10.1016/j.jconrel.2022.09.031"> doi: https://doi.org/10.1016/j.jconrel.2022.09.031</a>
</li>
......@@ -194,23 +194,23 @@ hypersensitivity of PEGylated products
<li typeof="schema:ScolarlyArticle" role="doc-biblioentry" property="schema:citation" id="desc-9">
<span property="schema:author" typeof="schema:Person">
<span property="schema:Name">
Jiang, A.</span>;
Jiang, A.Y.</span>;
<span property="schema:Name"> Witten, J.</span>;
<span property="schema:Name"> Raji, I.</span>;
<span property="schema:Name"> Eweje, F.</span>;
<span property="schema:Name"> Raji, I.O.</span>;
<span property="schema:Name"> Eweje, F.a.M.</span>;
<span property="schema:Name"> Meng, S.</span>;
<span property="schema:Name"> Oladimeji, F.</span>;
<span property="schema:Name"> Hu, Y.</span>;
<span property="schema:Name"> Oladimeji, F.A.</span>;
<span property="schema:Name"> Hu, Y.a.M.</span>;
<span property="schema:Name"> Langer, R.</span>;
<span property="schema:Name"> Anderson, D.</span>
<span property="schema:Name"> Anderson, D.G.</span>
</span>
<span property="schema:name">&nbsp;
Combinatorial development of nebulized {mRNA} delivery formulations for the
lungs
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Nature Nanotechnology</i>
<b property="issueNumber" typeof="PublicationIssue"> 19</b>,&nbsp;
<span property="schema:pageBegin"> 364</span>-<span property="schema:pageEnd">375</span>
<span property="schema:pageBegin">364--375</span>
(<time property="schema:datePublished" datatype="xsd:gYear" dateTime=" 2024">2024</time>).
<a className="doi" href="https://doi.org/10.1038/s41565-023-01548-3"> doi: 10.1038/s41565-023-01548-3</a>
</li>
......@@ -226,22 +226,22 @@ Vilà-González, M.</span>;
Erika, </span>;
<span property="schema:Name"> Kool, H.</span>;
<span property="schema:Name"> Rodrat, M.</span>;
<span property="schema:Name"> Morell, C.</span>;
<span property="schema:Name"> Morell, C.M.a.A.</span>;
<span property="schema:Name"> Porter, L.</span>;
<span property="schema:Name"> Guo, W.</span>;
<span property="schema:Name"> Maeshima, R.</span>;
<span property="schema:Name"> Maeshima, R.a.H.</span>;
<span property="schema:Name"> McCaughan, F.</span>;
<span property="schema:Name"> Granata, A.</span>;
<span property="schema:Name"> Sheppard,
David N., </span>;
<span property="schema:Name"> Floto, R.</span>;
<span property="schema:Name"> Rawlins, E.</span>;
<span property="schema:Name"> Cicuta, P.</span>
<span property="schema:Name"> Floto, R.A.</span>;
<span property="schema:Name"> Rawlins, E.L.</span>;
<span property="schema:Name"> Cicuta, P.a.V.</span>
</span>
<span property="schema:name">&nbsp;
In vitro platform to model the function of ionocytes in the human airway
epithelium
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Respiratory Research</i>
<b property="issueNumber" typeof="PublicationIssue"> 25</b>,&nbsp;
<span property="schema:pageBegin">180</span>
......@@ -262,15 +262,15 @@ epithelium
{/*<!-- Citation num 12--> */}
<li typeof="schema:ScolarlyArticle" role="doc-biblioentry" property="schema:citation" id="desc-12">
<span property="schema:author" typeof="schema:Person">
<span property="schema:Name"> Wickiser, J.</span>
<span property="schema:Name"> Wickiser, J.K.</span>
</span>
<span property="schema:name">&nbsp;
The democratization of biology: how CRISPR and synthetic biology usher in new
biosecurity threats
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Defense Horizons</i>
<b property="issueNumber" typeof="PublicationIssue"> 85</b>,&nbsp;
<span property="schema:pageBegin"> 1</span>-<span property="schema:pageEnd">16</span>
<span property="schema:pageBegin">1--16</span>
(<time property="schema:datePublished" datatype="xsd:gYear" dateTime=" 2020">2020</time>).
</li>
......@@ -283,10 +283,10 @@ biosecurity threats
<span property="schema:name">&nbsp;
Security implications of CRISPR-enabled genome editing: New weapons of mass
disruption?
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Journal of Bioethical Inquiry</i>
<b property="issueNumber" typeof="PublicationIssue"> 16</b>,&nbsp;
<span property="schema:pageBegin"> 219</span>-<span property="schema:pageEnd">228</span>
<span property="schema:pageBegin">219--228</span>
(<time property="schema:datePublished" datatype="xsd:gYear" dateTime=" 2019">2019</time>).
<a className="doi" href="https://doi.org/10.1007/s11673-019-09914-5"> doi: 10.1007/s11673-019-09914-5</a>
</li>
......@@ -294,16 +294,16 @@ disruption?
{/*<!-- Citation num 14--> */}
<li typeof="schema:ScolarlyArticle" role="doc-biblioentry" property="schema:citation" id="desc-14">
<span property="schema:author" typeof="schema:Person">
<span property="schema:Name"> Doudna, J.</span>;
<span property="schema:Name"> Doudna, J.A.</span>;
<span property="schema:Name"> Charpentier, E.</span>
</span>
<span property="schema:name">&nbsp;
The rise of synthetic biology: New biosecurity risks and regulatory
challenges
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Nature Reviews Genetics</i>
<b property="issueNumber" typeof="PublicationIssue"> 21</b>,&nbsp;
<span property="schema:pageBegin"> 144</span>-<span property="schema:pageEnd">156</span>
<span property="schema:pageBegin">144--156</span>
(<time property="schema:datePublished" datatype="xsd:gYear" dateTime=" 2020">2020</time>).
<a className="doi" href="https://doi.org/10.1038/s41576-019-0182-7"> doi: 10.1038/s41576-019-0182-7</a>
</li>
......@@ -317,7 +317,7 @@ challenges
<span property="schema:name">&nbsp;
Public perception of CRISPR and genome editing: Misconceptions and media
portrayal
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Journal of Science Communication</i>
<b property="issueNumber" typeof="PublicationIssue"> 18</b>,&nbsp;
<span property="schema:pageBegin">A02</span>
......@@ -341,7 +341,7 @@ portrayal
<span property="schema:Name"> Rubeis, G.</span>;
<span property="schema:Name"> Steger, F.</span>
</span>
<span property="schema:name">&nbsp;Risks and benefits of human germline genome editing: An ethical analysis. </span>
<span property="schema:name">&nbsp;Risks and benefits of human germline genome editing: An ethical analysis</span>.
<i property="schema:publisher" typeof="schema:Organization"> Asian Bioethics Review</i>
<b property="issueNumber" typeof="PublicationIssue"> 10</b>,&nbsp;
<span property="schema:pageBegin">133–141</span>
......@@ -352,12 +352,12 @@ portrayal
{/*<!-- Citation num 18--> */}
<li typeof="schema:ScolarlyArticle" role="doc-biblioentry" property="schema:citation" id="desc-18">
<span property="schema:author" typeof="schema:Person">
<span property="schema:Name"> Ansah, E.</span>
<span property="schema:Name"> Ansah, E.O.</span>
</span>
<span property="schema:name">&nbsp;
Ethical Challenges and Controversies in the Practice and Advancement of Gene
Therapy
. </span>
</span>.
<i property="schema:publisher" typeof="schema:Organization"> Advances in Cell and Gene Therapy</i>
<b property="issueNumber" typeof="PublicationIssue"> 2022</b>,&nbsp;
<span property="schema:pageBegin">1–5</span>
......@@ -409,26 +409,26 @@ Therapy
<li typeof="schema:ScolarlyArticle" role="doc-biblioentry" property="schema:citation" id="desc-23">
<span property="schema:author" typeof="schema:Person">
<span property="schema:Name">
Kiani, A.</span>;
Kiani, A.K.</span>;
<span property="schema:Name"> Pheby, D.</span>;
<span property="schema:Name"> Henehan, G.</span>;
<span property="schema:Name"> Brown, R.</span>;
<span property="schema:Name"> Brown, R.a.S.</span>;
<span property="schema:Name"> Sykora, P.</span>;
<span property="schema:Name"> Marks, R.</span>;
<span property="schema:Name"> Falsini, B.</span>;
<span property="schema:Name"> Falsini, B.a.C.</span>;
<span property="schema:Name"> Miertus, S.</span>;
<span property="schema:Name"> Lorusso, L.</span>;
<span property="schema:Name"> Tartaglia, G.</span>;
<span property="schema:Name"> Ergoren, M.</span>;
<span property="schema:Name"> Lorusso, L.a.D.</span>;
<span property="schema:Name"> Tartaglia, G.M.</span>;
<span property="schema:Name"> Ergoren, M.C.</span>;
<span property="schema:Name"> Dundar, M.</span>;
<span property="schema:Name"> Michelini, S.</span>;
<span property="schema:Name"> Malacarne, D.</span>;
<span property="schema:Name"> Malacarne, D.a.B.</span>;
<span property="schema:Name"> Dautaj, A.</span>;
<span property="schema:Name"> Donato, K.</span>;
<span property="schema:Name"> Medori, M.</span>;
<span property="schema:Name"> Medori, M.C.</span>;
<span property="schema:Name"> Beccari, T.</span>;
<span property="schema:Name"> Samaja, M.</span>;
<span property="schema:Name"> Connelly, S.</span>;
<span property="schema:Name"> Connelly, S.T.</span>;
<span property="schema:Name"> Martin, D.</span>;
<span property="schema:Name"> Morresi, A.</span>;
<span property="schema:Name"> Bacu, A.</span>;
......@@ -436,11 +436,11 @@ Kiani, A.</span>;
Karen L., </span>;
<span property="schema:Name"> Kapustin, M.</span>;
<span property="schema:Name"> Stuppia, L.</span>;
<span property="schema:Name"> Lumer, L.</span>;
<span property="schema:Name"> Lumer, L.a.F.</span>;
<span property="schema:Name"> Bertelli, M.</span>;
<span property="schema:Name"> GROUP, I.B.S.</span>
</span>
<span property="schema:name">&nbsp;Ethical considerations regarding animal experimentation. </span>
<span property="schema:name">&nbsp;Ethical considerations regarding animal experimentation</span>.
<i property="schema:publisher" typeof="schema:Organization"> Journal of Preventive Medicine and Hygiene</i>
<b property="issueNumber" typeof="PublicationIssue"> 63</b>,&nbsp;
<span property="schema:pageBegin">E255–E266</span>
......
src/contents/safety.tsx
+ 415
− 12
View file @ 65b2c271
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