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Commit 0922be18 authored by Lucy Hao's avatar Lucy Hao :moyai:
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add gitlab and make wide

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......@@ -13,7 +13,7 @@ const Style = styled.div`
h4 {
font-weight: bold;
}
width: 45vw;
width: 55vw;
margin: auto;
@media only screen and (max-width: 768px) {
width: 80vw;
......
......@@ -321,6 +321,15 @@ A Gibbs free energy value of 11249.38 +/- 70.50 kJ/mol (2688.666348 cal/mol) ind
Thus, this should be taken into account when designing experiments with the Staygold protein, and perhaps another protein of choice may be better suited.
<details>
<summary><p>Code</p></summary>
<a href="https://gitlab.igem.org/looshiba/Staygold-Simple-Gromacs-Modelling">StayGold Simple Modelling</a>
IL-10 uses the same script commands as in the repository above.
<a href="https://gitlab.igem.org/looshiba/staygold-solvation-modelling">StayGold Solvation Modelling</a>
</details>
</div>
<div className="alternate-colors-curved-background padded-content math">
......@@ -377,7 +386,7 @@ To begin, we identified all exchange reactions present in the *V. natriegens* GS
Next, we tested different uptake rates for each metabolite by relaxing its lower bound constraint , and classified them as either having an impact on the overall Biomass Accumulation Rate (BAR) or not. Solutions to the FBA were calculated using COBRA’s _optimizeCbModel()_ function, and solutions being visualized using MATLAB’s base _plot()_ function.
Results revealed that only **Glucose and Fructose** substantially affected overall BAR. Among the remaining carbon sources, **D-Mannitol and Acetate** caused minor fluctuations in the BAR , while Glycerol, D-Mannose, Dulcose, Amylotriose, and Matohexaose had no effects on the BAR.
Results revealed that only **Glucose and Fructose** substantially affected overall BAR. Among the remaining carbon sources, **D-Mannitol and Acetate** caused minor fluctuations in the BAR, while Glycerol, D-Mannose, Dulcose, Amylotriose, and Matohexaose had no effects on the BAR.
<Figure src="https://static.igem.wiki/teams/4796/wiki/mathmodelling/1.png" num="8" caption={<>Plots showing the effect of varying uptake rate of <strong>only Glucose and Fructose</strong> on the BAR. The optimal Fructose uptake rate is 650 mmol/day, allowing for a growth rate of 44.23 1/day. The optimal Glucose uptake rate is 980 mmol/day, allowing for a growth rate of 36.58 1/day.</>}/>
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