Skip to content
Snippets Groups Projects
Commit 73f4a03f authored by Cheng Wui Lim's avatar Cheng Wui Lim
Browse files

Update file results.html

parent 409452e0
No related branches found
No related tags found
No related merge requests found
Pipeline #354933 passed
Stage: build
Stage: deploy
Hide whitespace changes
Inline Side-by-side
Showing
with 7 additions and 7 deletions
wiki/pages/results.html
+ 7
− 7
View file @ 73f4a03f
...@@ -93,7 +93,7 @@ ...@@ -93,7 +93,7 @@
<p>The interactions between Methylene Blue and Proteins of interest are analyzed by Discovery Studio (BIOVIA DS, 2016), and visualized by PyMOL (Schrodinger LLC, 2020). Note that MB has different binding sites among all proteins of interest.</p> <p>The interactions between Methylene Blue and Proteins of interest are analyzed by Discovery Studio (BIOVIA DS, 2016), and visualized by PyMOL (Schrodinger LLC, 2020). Note that MB has different binding sites among all proteins of interest.</p>
<p>The above analysis serves as preliminary models to identify and visualize interactions between Methylene Blue and Proteins of interest.</p> <p>The above analysis serves as preliminary models to identify and visualize interactions between Methylene Blue and Proteins of interest.</p>
<p></p> <p></p>
<h5>2BOQ: <i>Pleurotus eryngii</i> Versatile Peroxidase (vpl2)</h5> <h5 style="text-align center">2BOQ: <i>Pleurotus eryngii</i> Versatile Peroxidase (vpl2)</h5>
<figure style="text-align:center;"> <figure style="text-align:center;">
<img src="https://static.igem.wiki/teams/4936/wiki/results/2boq-2d.jpeg" style="max-width: 600px;max-height: 600px;"> <img src="https://static.igem.wiki/teams/4936/wiki/results/2boq-2d.jpeg" style="max-width: 600px;max-height: 600px;">
</figure> </figure>
...@@ -105,7 +105,7 @@ ...@@ -105,7 +105,7 @@
<iframe title="PLKNPLC-HK: 2boq VMD video (2023) [English]" width="560" height="315" src="https://video.igem.org/videos/embed/c987198a-9ab4-4b5d-bd34-16cc57c59f61" frameborder="0" allowfullscreen="" sandbox="allow-same-origin allow-scripts allow-popups"></iframe> <iframe title="PLKNPLC-HK: 2boq VMD video (2023) [English]" width="560" height="315" src="https://video.igem.org/videos/embed/c987198a-9ab4-4b5d-bd34-16cc57c59f61" frameborder="0" allowfullscreen="" sandbox="allow-same-origin allow-scripts allow-popups"></iframe>
</figure> </figure>
<p></p> <p></p>
<h5>3M5Q: <i>Phanerodontia chrysosporium</i> Magnesium Peroxidase (mnp1)</h5> <h5 style="text-align center">3M5Q: <i>Phanerodontia chrysosporium</i> Magnesium Peroxidase (mnp1)</h5>
<figure style="text-align:center;"> <figure style="text-align:center;">
<img src="https://static.igem.wiki/teams/4936/wiki/results/3m5q-2d.jpeg" style="max-width: 600px;max-height: 600px;"> <img src="https://static.igem.wiki/teams/4936/wiki/results/3m5q-2d.jpeg" style="max-width: 600px;max-height: 600px;">
</figure> </figure>
...@@ -117,7 +117,7 @@ ...@@ -117,7 +117,7 @@
<iframe title="PLKNPLC-HK: 3m5q VMD video (2023) [English]" width="560" height="315" src="https://video.igem.org/videos/embed/61758bda-ad12-407a-8d88-f35974eeabcc" frameborder="0" allowfullscreen="" sandbox="allow-same-origin allow-scripts allow-popups"></iframe> <iframe title="PLKNPLC-HK: 3m5q VMD video (2023) [English]" width="560" height="315" src="https://video.igem.org/videos/embed/61758bda-ad12-407a-8d88-f35974eeabcc" frameborder="0" allowfullscreen="" sandbox="allow-same-origin allow-scripts allow-popups"></iframe>
</figure> </figure>
<p></p> <p></p>
<h5>1KYA: Trametes versicolor Laccase (lac2)</h5> <h5 style="text-align center">1KYA: Trametes versicolor Laccase (lac2)</h5>
<figure style="text-align:center;"> <figure style="text-align:center;">
<img src="https://static.igem.wiki/teams/4936/wiki/results/1kya-2d.jpeg" style="max-width: 600px;max-height: 600px;"> <img src="https://static.igem.wiki/teams/4936/wiki/results/1kya-2d.jpeg" style="max-width: 600px;max-height: 600px;">
</figure> </figure>
...@@ -129,7 +129,7 @@ ...@@ -129,7 +129,7 @@
<iframe title="PLKNPLC-HK: 1KYA VMD video (2023) [English]" width="560" height="315" src="https://video.igem.org/videos/embed/ce34848b-9cab-42ff-847f-8b8979a3583d" frameborder="0" allowfullscreen="" sandbox="allow-same-origin allow-scripts allow-popups"></iframe> <iframe title="PLKNPLC-HK: 1KYA VMD video (2023) [English]" width="560" height="315" src="https://video.igem.org/videos/embed/ce34848b-9cab-42ff-847f-8b8979a3583d" frameborder="0" allowfullscreen="" sandbox="allow-same-origin allow-scripts allow-popups"></iframe>
</figure> </figure>
<p></p> <p></p>
<h5>1B80: <i>Phanerodotia chrysosporium</i> Lignin Peroxidase H8 (liph8)</h5> <h5 style="text-align center">1B80: <i>Phanerodotia chrysosporium</i> Lignin Peroxidase H8 (liph8)</h5>
<figure style="text-align:center;"> <figure style="text-align:center;">
<img src="https://static.igem.wiki/teams/4936/wiki/results/1b80-2d.jpeg" style="max-width: 600px;max-height: 600px;"> <img src="https://static.igem.wiki/teams/4936/wiki/results/1b80-2d.jpeg" style="max-width: 600px;max-height: 600px;">
</figure> </figure>
...@@ -141,7 +141,7 @@ ...@@ -141,7 +141,7 @@
<iframe title="PLKNPLC-HK: 1b80 VMD video (2023) [English]" width="560" height="315" src="https://video.igem.org/videos/embed/274de8fd-19e1-4426-8726-4d7f9ec5f57e" frameborder="0" allowfullscreen="" sandbox="allow-same-origin allow-scripts allow-popups"></iframe> <iframe title="PLKNPLC-HK: 1b80 VMD video (2023) [English]" width="560" height="315" src="https://video.igem.org/videos/embed/274de8fd-19e1-4426-8726-4d7f9ec5f57e" frameborder="0" allowfullscreen="" sandbox="allow-same-origin allow-scripts allow-popups"></iframe>
</figure> </figure>
<p></p> <p></p>
<h5>TvLiP: <i>Trametes versicolor</i> Lignin Peroxidase (lpg3)</h5> <h5 style="text-align center">TvLiP: <i>Trametes versicolor</i> Lignin Peroxidase (lpg3)</h5>
<figure style="text-align:center;"> <figure style="text-align:center;">
<img src="https://static.igem.wiki/teams/4936/wiki/results/tvlip-2d.png" style="max-width: 600px;max-height: 600px;"> <img src="https://static.igem.wiki/teams/4936/wiki/results/tvlip-2d.png" style="max-width: 600px;max-height: 600px;">
</figure> </figure>
...@@ -159,7 +159,7 @@ ...@@ -159,7 +159,7 @@
</div> </div>
<div class="col-lg-12"> <div class="col-lg-12">
<h5>The SwissDock binding mode cluster with lowest FullFitness Energetics is shown below</h5> <h5 style="text-align center">The SwissDock binding mode cluster with lowest FullFitness Energetics is shown below</h5>
<figure style="text-align:center;"> <figure style="text-align:center;">
<figcaption>2BOQ: Pleurotus eryngii Versatile Peroxidase (vpl2)</figcaption> <figcaption>2BOQ: Pleurotus eryngii Versatile Peroxidase (vpl2)</figcaption>
<img src="https://static.igem.wiki/teams/4936/wiki/results/2boq-energetics-2.png" style="max-width: 600px;max-height: 600px;"> <img src="https://static.igem.wiki/teams/4936/wiki/results/2boq-energetics-2.png" style="max-width: 600px;max-height: 600px;">
...@@ -194,7 +194,7 @@ ...@@ -194,7 +194,7 @@
<div class="col-lg-12"> <div class="col-lg-12">
<hr> <hr>
<h5>Reference:</h5> <h5 style="text-align center">Reference:</h5>
<ul>[1] Grosdidier, A., Zoete, V., & Michielin, O. (2007). EADock: Docking of small molecules into protein active sites with a multiobjective evolutionary optimization. Proteins, 67(4), 1010–1025. https://doi.org/10.1002/prot.21367</ul> <ul>[1] Grosdidier, A., Zoete, V., & Michielin, O. (2007). EADock: Docking of small molecules into protein active sites with a multiobjective evolutionary optimization. Proteins, 67(4), 1010–1025. https://doi.org/10.1002/prot.21367</ul>
<ul>[2] Hekkelman, M. L., De Vries, I., Joosten, R. P., & Perrakis, A. (2022). AlphaFill: enriching AlphaFold models with ligands and cofactors. Nature Methods, 20(2), 205–213. https://doi.org/10.1038/s41592-022-01685-y</ul> <ul>[2] Hekkelman, M. L., De Vries, I., Joosten, R. P., & Perrakis, A. (2022). AlphaFill: enriching AlphaFold models with ligands and cofactors. Nature Methods, 20(2), 205–213. https://doi.org/10.1038/s41592-022-01685-y</ul>
<ul>[3] Mirdita, M., Schütze, K., Moriwaki, Y., Heo, L., Овчинников, С. Г., & Steinegger, M. (2022). ColabFold: making protein folding accessible to all. Nature Methods, 19(6), 679–682. https://doi.org/10.1038/s41592-022-01488-1</ul> <ul>[3] Mirdita, M., Schütze, K., Moriwaki, Y., Heo, L., Овчинников, С. Г., & Steinegger, M. (2022). ColabFold: making protein folding accessible to all. Nature Methods, 19(6), 679–682. https://doi.org/10.1038/s41592-022-01488-1</ul>
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment