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Commit 625167c7 authored by Juan Antonio Alfaro Almaguer's avatar Juan Antonio Alfaro Almaguer
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UpdateSFTWRefs

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<strong>References</strong>
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<li>https://2013.igem.org/Team:Paris_Bettencourt</li>
<li>Na D, Yoo SM, Chung H, Park H, Park JH, Lee SY. Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs. Nat Biotechnol. 2013 Feb;31(2):170-4. doi: 10.1038/nbt.2461. Epub 2013 Jan 20. PMID: 23334451</li>
<li>Tafer H, Ameres SL, Obernosterer G, Gebeshuber CA, Schroeder R, Martinez J, Hofacker IL. The impact of target site accessibility on the design of effective siRNAs. Nat Biotechnol. 2008 May;26(5):578-83. doi: 10.1038/nbt1404. Epub 2008 Apr 27. PMID: 18438400</li>
<li>Vazquez-Anderson J, Mihailovic MK, Baldridge KC, Reyes KG, Haning K, Cho SH, Amador P, Powell WB, Contreras LM. Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible RNA regions. Nucleic Acids Res. 2017 May 19;45(9):5523-5538. doi: 10.1093/nar/gkx115. PMID: 28334800; PMCID: PMC5435917</li>
<li>Mysara M, Garibaldi JM, Elhefnawi M. MysiRNA-designer: a workflow for efficient siRNA design. PLoS One. 2011;6(10):e25642. doi: 10.1371/journal.pone.0025642. Epub 2011 Oct 26. Erratum in: PLoS One. 2015;10(3):e0119062. PMID: 22046244; PMCID: PMC3202522</li>
<li>Arziman Z, Horn T, Boutros M. E-RNAi: a web application to design optimized RNAi constructs. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W582-8. doi: 10.1093/nar/gki468. PMID: 15980541; PMCID: PMC1160229</li>
<li>Lalaouna, D., Simoneau-Roy, M., Lafontaine, D., & Massé, E. (2013). Regulatory RNAs and target mRNA decay in prokaryotes. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1829(6–7), 742–747. https://doi.org/10.1016/j.bbagrm.2013.02.013</li>
<li>Wagner, E. G. H. & Romby, P. (2015). Small RNAs in Bacteria and Archaea. Advances in Genetics, 133-208. https://doi.org/10.1016/bs.adgen.2015.05.001</li>
<li>Yoo SM, Na D, Lee SY. Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli. Nat Protoc. 2013 Sep;8(9):1694-707. doi: 10.1038/nprot.2013.105. Epub 2013 Aug 8. PMID: 23928502</li>
<li>Zhu, L. P., Song, S. Z., & Yang, S. (2021). Gene repression using synthetic small regulatory RNA in Methylorubrum extorquens. Journal of Applied Microbiology, 131(6), 2861–2875. https://doi.org/10.1111/jam.15159</li>
<li>Kumar, K., Chakraborty, A., & Chakrabarti, S. (2021). PresRAT: A server for identification of bacterial small-RNA sequences and their targets with probable binding region. RNA Biology, 18(8), 1152–1159. https://doi.org/10.1080/15476286.2020.1836455</li>
<li>Lorenz R, Bernhart SH, Höner Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker IL. ViennaRNA Package 2.0. Algorithms Mol Biol. 2011 Nov 24;6:26. doi: 10.1186/1748-7188-6-26. PMID: 22115189; PMCID: PMC3319429</li>
<li>Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL. The Vienna RNA websuite. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W70-4. doi: 10.1093/nar/gkn188. Epub 2008 Apr 19. PMID: 18424795; PMCID: PMC2447809</li>
<li>Chen, S. & Burke-Aguero, D. H. (2015, 24 febrero). Computational Methods for Understanding Riboswitches (ISSN Book 553) (English Edition) (1.a ed.). Academic Press</li>
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