Full CLI + Bootstrapping & CI for uncertainty quantification

Alexei Manuelrequested to merge
2025-10-04-m705-23df8 into main

Enhance README with quickstart guide and command descriptions; add bootstrap functionality for uncertainty quantification in fit_kinetics.py; implement ODE simulation and confidence interval calculations in ode_model.py; update results format for bootstrap statistics in kinetics_CA.json.

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