From e7095d9ec911c4d33c445e942bfc80bdbd07f964 Mon Sep 17 00:00:00 2001
From: Zhefu Li <zf-li23@mails.tsinghua.edu.cn>
Date: Tue, 1 Oct 2024 14:14:12 +0000
Subject: [PATCH] Update model.html
---
wiki/pages/model.html | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/wiki/pages/model.html b/wiki/pages/model.html
index 01086424..5fd81832 100644
--- a/wiki/pages/model.html
+++ b/wiki/pages/model.html
@@ -713,7 +713,7 @@ out=muscure.pdbqt</div>
receptor <code>MOR_processed.gro</code> into a single system <code>complex.gro</code>.
</li>
<pre><code>gmx editconf -f mus_ini.pdb -o mus.gro
- gmx editconf -f complex.gro -o newbox.gro -bt dodecahedron -d 1.0</code></pre>
+gmx editconf -f complex.gro -o newbox.gro -bt dodecahedron -d 1.0</code></pre>
<li>Solvate the system in solvent (such as water). From <code>topol.top</code>, it is known that the
net charge is 9; add counterions to neutralize the system.</li>
@@ -804,8 +804,7 @@ dit xvg_show -f temperature.xvg</code></pre>
</ul>
<pre><code>gmx grompp -f md.mdp -c npt.gro -t npt.cpt -p topol.top -n index.ndx -o md_0_10.tpr
- gmx mdrun -deffnm md_0_10
- </code></pre>
+gmx mdrun -deffnm md_0_10</code></pre>
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/mds.png" alt="MDS"
class="shadowed-image" style="width: 100%; max-width: 1000px;">
--
GitLab