From 1e910c972b71b561de06a7e7a40e74c328eb85f3 Mon Sep 17 00:00:00 2001
From: Zhefu Li <zf-li23@mails.tsinghua.edu.cn>
Date: Tue, 1 Oct 2024 12:07:35 +0000
Subject: [PATCH] Update model.html
---
wiki/pages/model.html | 36 ++++++++++++++++++------------------
1 file changed, 18 insertions(+), 18 deletions(-)
diff --git a/wiki/pages/model.html b/wiki/pages/model.html
index 4d9673db..0463ebee 100644
--- a/wiki/pages/model.html
+++ b/wiki/pages/model.html
@@ -578,7 +578,7 @@
</ul>
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/or5an6.png"
- alt="AF-Q8VFV4-F1-model_v4.pdb" class="shadowed-image" style="width: 100%; max-width: 1000px;">
+ alt="AF-Q8VFV4-F1-model_v4.pdb" class="shadowed-image" style="width: 80%; max-width: 800px;">
</div>
<p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 6 Protein structure of MOR215-1
</p>
@@ -671,7 +671,7 @@
alt="Tyr-271" class="shadowed-image"
style="width: 100%; max-width: 1000px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 7
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 8
Alternative Conformation with Tyr-271</p>
</li>
<li>Select conformations with low free energy that are more likely, extract in pdb
@@ -756,9 +756,9 @@
dit xvg_show -f potential.xvg</code></pre>
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/potential.png" alt="potential"
- class="shadowed-image" style="width: 50%; max-width: 500px;">
+ class="shadowed-image" style="width: 80%; max-width: 80px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 8 Potential Energy
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 9 Potential Energy
Minimization</p>
</ul>
<h3>4. Molecular Dynamics Simulation</h3>
@@ -790,15 +790,15 @@
</code></pre>
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/pressure.png" alt="pressure"
- class="shadowed-image" style="width: 50%; max-width: 500px;">
+ class="shadowed-image" style="width: 80%; max-width: 800px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 9 Curve of the pressure over time
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 10 Curve of the pressure over time
</p>
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/density.png" alt="density"
- class="shadowed-image" style="width: 50%; max-width: 500px;">
+ class="shadowed-image" style="width: 80%; max-width: 800px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 10 Curve of the density over time
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 11 Curve of the density over time
</p>
<h4>2. Production Simulation:</h4>
<ul>
@@ -817,14 +817,14 @@
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/mds.png" alt="MDS"
class="shadowed-image" style="width: 100%; max-width: 1000px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 11 Molecular dynamics simulation
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 12 Molecular dynamics simulation
process
</p>
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/mds-result.png" alt="density"
class="shadowed-image" style="width: 100%; max-width: 1000px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 12 Results of the molecular
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 13 Results of the molecular
dynamics simulations
</p>
<h3>5. Post-Processing and Analysis</h3>
@@ -885,9 +885,9 @@
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/muscure.gif" alt="Trajectory Analysis"
- class="shadowed-image" style="width: 50%; max-width: 500px;">
+ class="shadowed-image" style="width: 80%; max-width: 800px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 13 Trajectory Analysis
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 14 Trajectory Analysis
</p>
<h4>2. RMSD (Root Mean Square Deviation) Analysis</h4>
@@ -925,9 +925,9 @@
</ul>
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/rmsd.png" alt="RMSD Plot"
- class="shadowed-image" style="width: 50%; max-width: 500px;">
+ class="shadowed-image" style="width: 80%; max-width: 800px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 14 RMSD Analysis
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 15 RMSD Analysis
</p>
<h4>3. Radius of Gyration (Rg) Calculation</h4>
@@ -951,9 +951,9 @@
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/gr1.png"
alt="Additional Radius of Gyration Plot" class="shadowed-image"
- style="width: 50%; max-width: 500px;">
+ style="width: 80%; max-width: 800px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 15 Radius of Gyration Calculation
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 16 Radius of Gyration Calculation
</p>
<h4>4. Protein-Ligand Interaction Energy</h4>
@@ -980,9 +980,9 @@
</code></pre>
<div class="image-container">
<img src="https://static.igem.wiki/teams/5187/wiki-model-fig/energy.png"
- alt="Interaction Energy Plot" class="shadowed-image" style="width: 50%; max-width: 500px;">
+ alt="Interaction Energy Plot" class="shadowed-image" style="width: 80%; max-width: 800px;">
</div>
- <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 16 Protein-Ligand Interaction
+ <p style="text-align: center; font-size: 0.9em; margin-top: 10px;">fig 17 Protein-Ligand Interaction
Energy
</p>
--
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