from model.Model import Model receptor_name = "xylS_m1_TPA" ligand_name = "TPA" receptor_path = f"data/mutants/raw/{receptor_name}.pdb" ligand_path = f"data/ligands/raw/{ligand_name}.sdf" tmpname = Model("./checkpoints/esm2_t33_650M_UR50D.pt", { "device": "cpu", "outputdir": "./results/mutants", "verbose": 2 }) # should then input data => Model.input(receptor_path, ligand_path) # should then compute mutants one by one => Model.generate() * n # should then log the results and write the summary file and PDBs => => Model.results()