from model.Model import Model import argparse # if called from command line if __name__ == "__main__": parser = argparse.ArgumentParser() parser.add_argument("-d", "--device", type=str, default="cuda:0", help="Set the device (cpu or cuda:0)") parser.add_argument("-o", "--output", type=str, default="./results/mutants", help="Set the path for the output directory (defaults to ./results/mutants)") parser.add_argument("-v", "--verbose", type=int, choices=[0, 1, 2], default=1, help="Set the verbosity between 0 and 2") parser.add_argument("--receptor", type=str, required=True, help="Set the receptor filepath") parser.add_argument("--ligand", type=str, required=True, help="Set the ligand filepath") # parse arguments args = parser.parse_args() # instantiates the model with args tmpname = Model("./checkpoints/checkpoint.pt", { "device": args.device, "output": args.output, "verbose": args.verbose }) # pass mol files to the model tmpname.input(args.receptor, args.ligand) # should then compute mutants one by one => Model.generate() * n # should then log the results and write the summary file and PDBs => => Model.results()